Poster Abstracts | Bay Area RNA Club

This page contains the published poster abstracts

Find presentations that align with your interests and add them to your Program. Here you can search for Presentation title or filter by Topic or Category. Note that odd numbered posters will be presented in the morning-- and even numbered abstracts presented in the afternoon

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	Poster Title	Name \| Format	User Submitted Keywords
1	Structural analysis of DDX3 targeted 5’ UTRs	Till Schroeder \| Poster Presentation	5' untranslated region, 5' UTR, DDX3X, SHAPE-MaP, translation initiation, RNA structure
2	Codon choice modulates protein output by limiting translation initiation	Lou Devanneaux \| Poster Presentation	Codon usage, Translation control, translation initiation, translation regulation, ribosome profiling, Translation elongation
3	When does codon choice matter in translation?	Maria McSharry \| Poster Presentation	synonymous codons, Translation
4	Tracking Telomerase Recruitment to Human Telomere DNA Ends Using Real-Time Single- Molecule FRET	Mareike Badstuebner \| Poster Presentation	ribonucleoprotein
5	Principles and properties of disordered regions in post-transcriptional control	Joe Lobel, PhD \| Poster Presentation	mRNA decay, disordered proteins, high-throughput approaches
6	HnRNP-A2/B1promotes the inflammatory signaling cascade in infection models and autoimmune disease	Mays Salih, PhD \| Poster Presentation	immunomodulation
7	Ribosome rescue factor PELOTA modulates translation start site choice and protein isoform levels of transcription factor C/EBPα	Samantha Fernandez, PhD \| Poster Presentation	translation regulation, Translation control, translation initiation
8	Tag-free rapid enrichment of ribosome associated proteins across cell types and tissues	Teodorus Theo Susanto \| Poster Presentation	ribosomes, development
9	DEFINING THE ROLE OF DDX3X IN TRANSLATION INITIATION	Kevin Wilkins, PhD \| Poster Presentation	DDX3X, messenger RNA mRNA, 5' UTR, RNA helicase
10	The (mis)behavior of E. coli RNA polymerase on RNA replicons	Drew Galls \| Poster Presentation	RNA world, RNA amplification, DNA-directed RNA polymerase, viruses
11	New telomere-to-telomere CHM13 assembly of the human genome reveals a complex and expanded tRNA landscape	Alex Bagi \| Poster Presentation	tRNA, Genetic Variation
12	Discovery and characterization of novel peptides in inflammation and immunity	Eric Malekos \| Poster Presentation	short open reading frames, inflammation, micropeptides, ribosome profiling
13	Directed evolution of CRISPR-Cas13 on yeast surface	Rongbing Huang, PhD \| Poster Presentation	CRISPR, RNA-binding proteins
14	Defining the function of sequence variation in human rRNA	Sohyun Gu, PhD \| Poster Presentation	ribosomal RNA, Translation control
15	Pseudouridine modification site selection by PUS7 to control gene expression	Rebecca Rodell \| Poster Presentation	RNA modifications, gene expression, pseudouridine, RNA processing
16	Capturing the adaptive immune receptor repertoire of diverse vertebrates with third-generation sequencing	Dori Deng \| Poster Presentation	RNA sequencing, nanopore sequencing, antibody sequencing
17	Consequences of gene size variation during evolution	Matthew McCoy, PhD \| Poster Presentation	gene expression, isoforms
18	Using High-Throughput CRISPR based Screens to Identify Novel Long Noncoding RNAs Involved in Macrophage Viability	Cristina Flores, PhD \| Poster Presentation	CRISPRi Screens, Long Intergenic Non Coding RNAs, Macrophage Biology
19	Exploring a novel requirement for a PARK9 homolog in No-Go mRNA Decay in C. elegans	Chloe Wohlenberg \| Poster Presentation	mRNA decay, Messenger RNA
20	Understanding LncRNA GAPLINC's Role in Septic Shock	Diana Escalona \| Poster Presentation	lncRNA
21	Engineering a synthetic tRNA and uncovering translation roadblocks	Miri Krupkin, PhD \| Poster Presentation	tRNA, ribosomes, Translation, Synthetic biology
22	U2 snRNA pseudouridylation in the recognition of branch-site sequence during pre-mRNA splicing	Rui Zhang, PhD \| Poster Presentation	pre-mRNA splicing, RNA modification
23	Uncovering NMD specificity factors using an overlooked class of transcripts	Claudia Medrano \| Poster Presentation	Nonsense mediated decay, gene regulation, RNA genomics
24	A novel live cell imaging assay to characterize co-transcriptional messenger ribonucleoprotein (mRNP) assembly in S. cerevisiae	Theresa Wechsler \| Poster Presentation	mRNP, mRNA export, post-transcriptional RNA processing, transcription, Fluorescence Microscopy, live cell imaging
25	Co-translational mRNA surveillance by the ER stress sensor, IRE1.	Smriti Sangwan, PhD \| Poster Presentation	Unfolded Protein Response
26	Mitochondrial RNA and RNA biogenesis factors are nucleoid components linked to mitochondrial genome replication	John Smolka, PhD \| Poster Presentation	mitochondria, mtDNA, tRNA, transcription, aminoacylation
27	Identification of Functional Implications of Gene Fusion Isoforms and Complex Structural Variants Using Long-Read RNA-seq	Colette Felton \| Poster Presentation	alternative RNA splicing, gene fusions, isoforms, Computational RNA splicing analysis, Driver genes
28	PDBCleanV2: A Python Library for Creating Self-Consistent Structure Datasets.	Fatima Pardo Avila, PhD \| Poster Presentation	RNA structure, RNA-Protein complex, software
29	Helicobacter pylori and the gastric microbiome	Verima Pereira, PhD \| Poster Presentation	Helicobacter pylori and the gastric microbiome
30	choros: correction of sequence-based biases for accurate quantification of ribosome profiling data	Liana Lareau \| Poster Presentation	ribosome profiling, bioinformatics, Translation, Translation elongation
31	Relating 3D genome architecture to protocadherin choice in single cells	Alex Buckley \| Poster Presentation	protocadherins, gene regulation, chromatin, in situ hybridization, 3D genome organization
32	RNA monsters generated by human mitochondrial RNA polymerase	Emily Greenwald \| Poster Presentation	mitochondria, RNA polymerase, transcription, mitochondrial polymerase
33	NMD regulation of circular RNA during aging in C. elegans	Emmanuel Adeyemi , PhD \| Poster Presentation	Circular RNA
34	Predicting site-specific modifications used for thermal stability of tRNAs in Thermococcus kodakarensis	Jesse Leavitt, PhD \| Poster Presentation	tRNA modification
35	G3BP proteins regulate protein synthesis in mammalian cells	José Liboy-Lugo \| Poster Presentation	stress, gene regulation, RNA binding proteins
36	High-Throughput Chemical Screen for Small Molecule Translational Activators	Travis Lantz, PhD \| Poster Presentation	Translation control, Chemical screen, disease
37	Investigating the role of DDX3 in regulating mRNA export	Albert Xu \| Poster Presentation	DDX3X, mRNA export, CRISPRi
38	Developing nonsense-mediated decay evading therapeutics for PTC-inducing DDX3X alleles	Margaret Gadek \| Poster Presentation	Antisense oligos, exon-skipping, intellectual disability, cancer, RNA therapeutics, Nonsense mediated decay, premature termination codons
39	Rules for Synonymous Codon Choice: When do suboptimal codons matter?	Helen Sakharova \| Poster Presentation	Codon usage, Rare codons, machine learning
40	Quantitative tests of Pumilio-mediated mRNA decay	Gabriel Tauber \| Poster Presentation	RNA Binding Protein, RNA decay, RNA sequencing, high-throughput assay
41	Epigenetic editing of alternative splicing in psychedelic-induced plasticity	Michael Hsiao \| Poster Presentation	alternative RNA splicing, CRISPRi, Neuroscience
42	The role of circRNAs on Amyloid-beta toxicity in C. elegans	Hussam ALSHAREEF, PhD \| Poster Presentation	Circular RNA
43	Discovery of novel combination cancer therapies with tCDK inhibitors	Monika Macakova \| Poster Presentation	RNA polymerase, CRISPRi Screens, cancer, transcription, targeted therapies
44	High-Throughput Systems for Understanding the Post-Transcriptional Regulation of Gene Expression	Abby Thurm \| Poster Presentation	gene regulation, gene expression, RNA binding proteins
45	The role of IGF2BP3 in RISC target site selection during acute MLL B-lymphoblastic leukemia	Lyna Kabbani, PhD \| Poster Presentation	microRNA, post-transcriptional RNA processing, cancer
46	An Isodecoder-specific Mouse Tissue Atlas of tRNAs, tDRs, and Predicted Modifications	Aidan Manning \| Poster Presentation	tRNA, tRNA-derived fragment, RNA sequencing, Next-generation sequencing
47	Investigation of modified nucleotide polymers as barcodes for direct RNA sequencing	Justin Sim \| Poster Presentation	nanopore sequencing, Base modifications
48	Alternative splicing of ultraconserved poison exons during neurogenesis	Karinna Vivanco \| Poster Presentation	alternative splicing, splicing factors, SR genes, poison exons, neurogenesis
49	Nanopore full-length mRNA sequencing supports endonucleolytic cleavage, but not deadenylation, as a mechanism of Nonsense-Mediated mRNA Decay	Marcus Viscardi \| Poster Presentation	mRNA decay, enzymes cleaving RNA, RNA polyadenylation, Translation, Nonsense mediated decay, nanopore sequencing
50	The Impact of Periodic Stress on Human Cells	Angela Gao \| Poster Presentation	stress, Liquid-liquid phase separation
51	Using High-Throughput CRISPRi-based Screens to Identify Novel Growth Suppressor LncRNAs in Human monocytes	Christy Montano \| Poster Presentation	lncRNA, Cell proliferation, cancer, screening, CRISPRi
52	Identification of Linear Extrachromosomal DNA Termini in HIV, mitochondria, and other Next-Generation Sequencing Datasets	William Wang \| Poster Presentation	Computational Biology, Extrachromosomal DNA, DNA Sequencing, Next-generation sequencing, bioinformatics, cancer, HIV, mitochondria, mitochondrial DNA, William Wang, Nimit Jain, Karen Artiles
53	High throughput genomic and transcriptomic approaches to investigate causes of a Chronic Kidney Disease of unknown etiology (CKDu) in Sri Lanka	Karen Artiles, PhD \| Poster Presentation	RNAseq, transcriptome, taxonomic classification, pathogen detection, metagenomics
54	Small RNA sequencing of single cells using a single adapter and circularization approach	Rachel Clark, PhD \| Poster Presentation	microRNA, tinyRNA, Single cell, RNA sequencing, Next-generation sequencing, bioinformatics, scRNAseq
55	isoseq3: a complete end-to-end workflow with long reads for single-cell isoform sequencing	Roger Volden, PhD \| Poster Presentation	Single cell, transcriptome, Computational Biology, RNA sequencing, PacBio
56	A potential role for SARS-CoV-2 small viral RNAs in targeting host microRNAs and modulating gene expression	Zach Neeb, PhD \| Poster Presentation	SARS-CoV-2, microRNA, transcriptomics, svRNA
57	Next-Generation Digital Polymerase Chain Reaction: High-Dynamic-Range Single-Molecule DNA Counting via Ultrapartitioning	Emily Blair, PhD \| Poster Presentation	gene expression, technology, technology development, RT-PCR, PCR, ddPCR
58	Probing the binding patterns of Exon Junction Complex	Sam Kwok \| Poster Presentation	RNA Binding Protein, post-transcriptional RNA processing
59	R2 3’RNA determinants for function of the Bombyx mori retroelement protein	Anthony Rodriguez-Vargas \| Poster Presentation	RNA structure, Reverse Transcriptase, Retroelements, 3' untranslated region
60	epitoPeR enables scale up of high-content CRISPR screens	Krishna Choudhary, PhD \| Poster Presentation	ribosomal RNA, CRISPRi Screens, Fluorescence Microscopy, Computational Biology

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